Identification, Mapping, Isolation of the Genes Resisting to Bacterial Blight and Application in Rice
Author Correspondence author
Molecular Plant Breeding, 2012, Vol. 3, No. 12 doi: 10.5376/mpb.2012.03.0012
Received: 13 Sep., 2012 Accepted: 20 Sep., 2012 Published: 09 Oct., 2012
Xia et al., 2012, Identification, Mapping, Isolation of the Genes Resisting to Bacterial Blight and Breeding Application in Rice, Molecular Plant Breeding, Vol.3, No.12 120-130 (doi: 10.5376/mpb.2012.03.0012)
Bacterial blight, caused by Xanthomonas oryzae pv. Oryzae, is the most devastating plant bacterial disease in Asia. Exploration, identification and utilization of new resistant germplasms to rice breeding are the effective pathway to control the disease. Mapping and cloning the resistant genes makes MAS (marker-assisted selection) and transgenic technology play a great role in breeding program for disease resistance and let people have a profound insight on molecular mechanism of resistance to bacterial blight. In this paper, mapping, cloning and application of the genes resisting to bacterial blight were summarized, and also some suggestions were put forward to relieve the damaging extent caused by bacterial blight via utilizing disease resistant breeding program.
Bacterial blight caused by Xanthomonas oryzae pv. Oryzae, is the vascular bundle desease, and it has three common kinds: leaf blight type, wilting type and withering type. Bacterial blight broke out in many rice producing regions, such as Asia (China, Korea, Inidia, Philippines), America, North America and Australia since it was first found in Fukuoka of Japan in the 1890s. Except for Sinkiang and Gansu, bacterial blight occurred in many areas of China, especially in places near the sea, the river, the upland and easy waterlogged areas. Generally, the yield reduced 10%~30%, seriously more than 50%, and even 100% caused by this disease (Mew, 1987). Studying on genetics of resistance to bacterial blight was first carried out by Japan and IRRI, subsequently, followed by Sri Lanka, India, China and so on. Since the identification of strains Xoo used were different in different countries, scientists found that it was difficult to distinguish the resistance genes. In order to compare the identified genes, the identical differential standard was set up (Ogawa, 1993). Since the bacterial races vary continually influenced by the artificial and natural selection of genes resistance to bacterial blight, it is critical to explore and identify the new resistant resources to control the changeful races.
1 Identification of Resistance Genes to Rice Bacterial Blight
It is a long-term competitive evolutionary process between the pathogenicity of pathogenic bacteria and resistant hosts, the pathogenic bacteria will vary under stress of the resistant hosts, and the resistant hosts will react to the varied pathogenic bacteria in turn. One of the effective approaches to control the invasion of pathogenic bacteria of bacterial blight is exploring new resistant resources. As usual, the outstanding resources may be found in local varieties, wild rice varieties and artificial mutational materials. To date, 31 genes have been identified, which were located on 10 chromosomes except for Chr9 and Chr10 (Figure 1). The 6 cloned genes were identified to be resistant genes, 9 were unidentified genes, and there were 3 resistant genes from artificial mutation materials and 6 from local varieties (Nakai et al., 1998; Taura et al., 1991; Taura et al., 1992; Lee et al., 2003).
Figure 1 Approximate positions of the genes resisting to bacterial blight on chromosome |
1.1 Unidentified genes
Mutagenesis has played a great role in enriching the resistant resources of bacterial blight and the researchers have obtained a series of new genes which were in different resistance levels and resistance specurms. So far, 9 genes, from mutagenesis and local varieties have not been identified, listed in table 1.
1.2 Identified genes
Chromosome 2: xa24, a new recessive gene in DV86 was identified by Mir and Khush and confirmed by Khush and Angeles. Wu et al (2008) found that xa24 was resisted to the Philippine Xoo races 4, 6, 10 and Chinese Xoo srtains Zhe173, JL691, and KS-1-21, and was mapped on chromosome 2 within a 0.14 cM region, and an approximately 71 kb in length between RM14222 and RM14226.
Chromosome 3: Xa11, resistance to Japanese Xoo races IB, II, IIIA and V, was mapped on the short arm of chromosome 3 with a genetic distance 2.0 cM and 1.0 cM from the marker RM347 and KUX11, respectively (Goto et al., 2009).
Chromosome 4: up to now, seven genes included Xa1, Xa2, Xa12, Xa14, Xa25(t), Xa30(t) and Xa31(t) have been positioned on this chromosome. Except Xa25(t), other six genes distributed on the followed six clones: OSJNBa0008M17, OSJNBa0093O08, OSJNBa0058K23,OSJNB0085C12, OSJNBa0053k19 and OSJNBa0060E08. Xa1 and Xa12 are close linkage, Xa2 is located between HZR950-5 and HRZ970-4, Xa30(t) between LOC- Os4g53060 (0.2 cM) and LOC-Os4g53120 (0.1 cM), Xa31(t) between C600 (0.1 cM) and G235 (0.1 cM), Xa14 between HZR970-8 and HZR998-1, Xa25(t) between RM6748 and RM1153, covering 19 clones containing the above six clones (Ku et al., 2008; Wang et al., 2009; Bao et al., 2010; Yoshimura et al., 1998; He et al., 2006; Gao et al., 2005).
Chromosome 5: xa5 was a recessive gene conferring resistance to bacterial blight in whole growth period from DV85, DV86, and DZ78 in Bangladesh, located on the short arm of chromosome 5 within a 0.5 cM region, about 70 kb, flanked by SNPS marker RS7 and SSR marker RM611 (Sidu et al., 1978; Blair et al., 2003).
Chromosome 6: three genes, Xa7, Xa27 and xa33(t) were mapped on chromosome 6. Xa7, a dominant gene which did not mediate resistance to bacterial blight until adult-plant stage, mapped to an interval of 0.21 cM between the markers GDSSR02 and RM20593. Xa27, within a 0.052 cM region was flanked by the RFLP markers M964 and M1197 cosegregated with markers M631, M1230 and M449. RGP markers C12560S and S12715 with a genetic interval of 0.9 cM, lied outside of the RFLP markers M964 and M1197. The recombination frequency between marker G1091, and Xa7 was 8.8%, and was 22.1 cM away from marker S12715. However, Xa7 and Xa27 have different resistance spectrums to Xoo races of bacterial blight, confirming that Xa27 was not allelic to Xa7. xa33(t) was close linkage with marker RM20590, which cosegregateed with Xa7, however, the resistance characteristics were significant differ- rence between Xa7 and xa33(t) (Sidu et al., 1978; Gu et al., 2004; Korinsak et al., 2009).
Xa1, confered special resistance to japan Xoo race 1 (T7174), contains 3 extrons separated by 2 introns encoding a 5406 bp ORF flanked by 5' and 3' untranslated regions of 112 and 392 bp, the derived sequence of XA1 is composed of NBS and six imperfect LRR with not distinct transmember domain. Xa1 is a particular induced gene since its expression only detected in leaves inoculated by compatible, incompatible strains and water rather than intact leaves (Yoshimura et al., 1998).
Figure 2 The new hybrid crosses participating in the south regional test reacting to bacterial blight from 2007 to 2011
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4 Summary and prospect
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